species:   Cocin
pid:       PID1277
parent:    cci-milR-22
paralog:   
locus:     scaffold_260:438-501
matures:   ['UCGGUGUUGGUAAAAGUCG', 'CAAUUUACAACACCGGUG']
srr:       SRR9972094
genome:    /Users/jax/+Genomes/Fungal_genomes/Cocin.Copci_AmutBmut1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972094.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972094.cram scaffold_260:438-501

1 out of bounds
21 alignments
14 proper strand
14 stranded perfect matches

********************                        ********************
GUCGGUGUUGGUAAAAGUCGGGUGUCGGGUACAUUCCCCUUAUCCCCAAUUUACAACACCGGUG
.(((((((((.((((....(((((..(((......)))..)))))....)))))))))))))..
-UCGGUGUUGGUAAAAGUCG-------------------------------------------- l=19 a=4 c
----------------------------------------------CAAUUUACAACACCGGUG l=18 a=0 c*
-UCGGUGUUGGUAAAAGUCG-------------------------------------------- l=19 a=4 ma
----------------------------------------------CAAUUUACAACACCGGUG l=18 a=0 ma*

GUCGGUGUUGGUAAAAGUCG-------------------------------------------- l=20 a=1 
-UCGGUGUUGGUAAA------------------------------------------------- l=14 a=4 
-UCGGUGUUGGUAAAAGUCG-------------------------------------------- l=19 a=4 (c,ma)
-UCGGUGUUGGUAAAAGUCGGG------------------------------------------ l=21 a=1 
-UCGGUGUUGGUAAAAGUCGGGU----------------------------------------- l=22 a=3 
------------------------UCGGGUACAUUCCCCUUAUCCCC----------------- l=23 a=1 

mb-01011
ax-1011001
ku-01
ss-101010101100
fn-001
